PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g17920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 163aa    MW: 16940.7 Da    PI: 8.0838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g17920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00075325123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC+ Cgk F +   L  H  +H
  CA04g17920  3 YKCSVCGKGFGSYQALGGHKASH 25
                9*********9999998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-9225No hitNo description
PfamPF139121.6E-13227IPR007087Zinc finger, C2H2
SMARTSM003550.019325IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.302330IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-4325IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280525IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-95784No hitNo description
PfamPF139121.6E-116186IPR007087Zinc finger, C2H2
SMARTSM003551.86284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0586284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVYKCSVCGK GFGSYQALGG HKASHRKLVP GGDDQSTTST TTNATGTTTS VNGNGNRSGR  60
THECSICHKC FPTGQALGGH KRCHYDGGIG NGNANSGVSA SVGVTSSEGV GSTVSHRDFD  120
LNIPALPEFW LGFGSGEDEV ESPHPAKKSR LCLPPKYELF QH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5397460.0AF539746.1 Capsicum annuum zinc finger protein mRNA, complete cds.
GenBankAY1967040.0AY196704.1 Capsicum annuum cys2/his2-type zinc finger transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568860.11e-117PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962891e-42ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLQ71AU81e-117Q71AU8_CAPAN; Cys2/his2-type zinc finger transcription factor
STRINGPGSC0003DMT4000553911e-82(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-33salt tolerance zinc finger
Publications ? help Back to Top
  1. Kim SH, et al.
    CAZFP1, Cys2/His2-type zinc-finger transcription factor gene functions as a pathogen-induced early-defense gene in Capsicum annuum.
    Plant Mol. Biol., 2004. 55(6): p. 883-904
    [PMID:15604723]